Laboratory: High Performance Computing

2012

Journal (Paginated)

1. Kuttel, Michelle, Neil Ravenscroft, Michaela Foschiatti, Paola Cescutti and Roberto Rizzo (2012) Conformational properties of two exopolysaccharides produced by Inquilinus limosus, a cystic fibrosis lung pathogen. Carbohydrate Research 350:40-48.

2011

Conference Paper

1. Kuttel, Michelle, Yue Mao, Magnus Lundberg and Goran Widmalm (2011) CarbBuilder: an adjustable tool for building 3D molecular structures of carbohydrates for molecular simulation.. In Proceedings 7th IEEE International Conference on e-Science, Stockholm, Sweden.

Journal (Paginated)

1. Kuttel, Michelle (2011) The Conformational Free Energy of Carbohydrates. Mini-Reviews in Organic Chemistry 8(3):256-262.

Departmental Technical Report

1. Merry, Bruce and Christoph Held (2011) MLS reconstruction from noisy point sets. Technical Report CS11-04-00, Department of Computer Science, University of Cape Town.

Electronic Thesis or Dissertation

1. Tunbridge, Ian (2011) Graphics Processing Unit Accelerated Coarse-Grained Protein-Protein Docking. PhD, Department of Computer Science, University of Cape Town.

2010

Conference Paper

1. Clough, Duncan, Stefano Riviera, Michelle Kuttel, Vincent Geddes and Patrick Marais (2010) Panopticon: A Scalable Monitoring System. In Proceedings Proceedings of South African Institute for Computer Scientists and Information Technologists Conference (SAICSIT 2010).

2. Jansen van Vuuren, J., M. Kuttel and J. Gain (2010) Visualization of Solution Sets from Automated Docking of Molecular Structures. In Proceedings Proceedings of Afrigraph2010: the 7th International Conference on Virtual Reality, Computer Graphics, Visualization and Interaction in Africa, Franschoek, South Africa.

Journal (Paginated)

1. Tunbridge, Ian , Robert B. Best, James Gain and Michelle M. Kuttel (2010) Simulation of Coarse-Grained Protein-Protein Interactions with Graphics Processing Units. Journal of Chemical Theory and Computation 6:3588-3600.

Electronic Thesis or Dissertation

1. van den Berg, Rudolf (2010) Force-extension of the Amylose Polysaccharide. MSc, Department of Computer Science, University of Cape Town.

2009

Journal (Paginated)

1. Cross, Simon, Michelle Kuttel, John Stone and James Gain (2009) Visualisation of cyclic and multi-branched molecules with VMD. Journal of Molecular Graphics and Modelling 28(2):131-139.

2. Zawaira, Alexander , Marco Gallotta, Natasha Beeton-Kempen, Lauren Coulson, Patrick Marais, Michelle Kuttel and Johnathan Blackburn (2009) Exhaustive computational search of ionic-charge clusters that mediate interactions between mammalian cytochrome P450 (CYP) and P450-oxidoreductase (POR) proteins. Computational Biology and Chemistry.

Preprint

1. Cross, Simon, Michelle M. Kuttel, John E. Stone and James E. Gain (2009) Visualisation of Cyclic and Multi-Branched Molecules with VMD.

Electronic Thesis or Dissertation

1. McMahon, Peter (2009) Accelerating Genomic Sequence Alignment using High Performance Reconfigurable Computers. MSc, Department of Computer Science, University of Cape Town.

2008

Journal (Paginated)

1. Kuttel, Michelle M. (2008) Conformational free energy maps for globobiose
   (a-D-Galp-(1-4)-b-D-Galp) in implicit and explict aqueous solution. Carbohydrate Research 343(6):1091-1098.

Electronic Thesis or Dissertation

1. McMahon, Peter (2008) Accelerating Genomic Sequence Alignment using High Performance Reconfigurable Computers. MSc, Department of Computer Science, University of Cape Town.

2007

Conference Paper

1. Nakashole, Ndapandula, Hussein Suleman and Calvin Pedzai (2007) Dynamic Role Allocation for Small Search Engine Clusters. In Barnard, Lynette and Reinhard A Botha, Eds. Proceedings Annual Research Conference of the South African Institute of Computer Scientists and Information Technologists (SAICSIT 2007), Port Alfred, South Africa.

2. Suleman, Hussein (2007) Digital Libraries Without Databases: The Bleek and Lloyd Collection. In Kovács, László, Norbert Fuhr and Carlo Meghini, Eds. Proceedings Research and Advanced Technology for Digital Libraries, 11th European Conference (ECDL 2007), pages 392-403, Budapest, Hungary.

2006

Conference Paper

1. Omar, Muammar Zamir and Hussein Suleman (2006) Component-based Digital Library Scalability using Cluster Computing. In Proceedings 8th Annual Conference on WWW Applications, Free State.

2. Suleman, Hussein (2006) Parallelising Harvesting. In Proceedings 9th International Conference on the Asian Digital Library, Kyoto, Japan.

Journal (Paginated)

1. Kuttel, Michelle M., James Gain, Anton Burger and Ian Eborn (2006) Techniques for visualization of carbohydrate molecules. Journal of Molecular Graphics and Modelling 25:380-388.

This list was generated on Thu May 17 01:15:33 SAST 2012.