UCT CS Research Document Archive

Laboratory: High Performance Computing

    2017

    Conference Paper

    1. Rampersad, Laurisha , Sarah Blyth, Ed Elson and Michelle M. Kuttel (2017) Improving the usability of scientific software with participatory design: a new interface design for radio astronomy visualisation software. In Proceedings SAICSIT '17 Proceedings of the South African Institute of Computer Scientists and Information Technologists, Thaba 'Nchu, South Africa.

    Journal (Paginated)

    1. Kuttel, Michelle M. , Zaheer Timol and Neil Ravenscroft (2017) Cross protection in Neisseria meningitides serogroups Y and W polysaccharides: a comparative conformational analysis.. Carbohydrate Research 446:40-47.

    2. Kuttel, Michelle M. , Paola Cescutti, M. Distefano and Roberto Rizzo (2017) Fluorescence and NMR spectroscopy together with molecular simulations reveal amphiphilic characteristics of a Burkholderia biofilm exopolysaccharide. Journal of Biological Chemistry 292(26):11034-11042.

    3. Ravenscroft, Neil, A. Omar, J. Hlozek, C. Edmonds-Smith, R. Follador, F. Serventi, M. M. Kuttel, P. Cescutti and A. Faridmoayer (2017) Genetic and structural elucidation of capsular polysaccharides from Streptococcus pneumoniae serotype 23A and 23B, and comparison to serotype 23F.. Carbohydrate Research 450:19-29.

    2016

    Conference Paper

    1. Bellairs, James, Jason Hlozek, Timothy Egan and Michelle Kuttel (2016) An eHealth Android Application for Mobile Analysis of Microplate Assays. In Paul, Cunningham and Cunningham Miriam, Eds. Proceedings IST-Africa 2016, Durban, South Africa.

    2. Gueorguiev, Victor and Michelle Kuttel (2016) Implementation, Validation and Profiling of a Genetic Algorithm for Molecular Conformational Optimization. In Blauw, Frans F., Marijke Coetzee, Duncan A. Coulter, Elize M. Ehlers, Wai Sze Leung, Carl Marnewick and Dustin T. van der Haar, Eds. Proceedings Proceedings of the Annual Conference of the South African Institute of Computer Scientists and Information Technologists (SAICSIT 2016), Johannesburg.

    3. Silubonde, Sunganani, Digby Warner and Michelle Kuttel (2016) Effective Visualization of Tuberculosis Three-Drug Assays: A Design Study. In Blauw, Frans F. , Marijke Coetzee, Duncan A. Coulter, Elize M. Ehlers, Wai Sze Leung, Carl Marnewick and Dustin T. van der Haar, Eds. Proceedings Annual Conference of the South African Institute of Computer Scientists and Information Technologists (SAICSIT 2016), Johannesburg, South Africa.

    Journal (Paginated)

    1. Kuttel, Michelle M., Jonas Stahle and Goran Widmalm (2016) CarbBuilder: Software for Building Molecular Models of Complex Oligo- and Polysaccharide Structures. Journal of Computational Chemistry 37(22):2098-2105.

    2015

    Conference Paper

    1. Mulumba, Patrick, James Gain, Patrick Marais and Patrick Woudt (2015) Scientific Visualization of Radio Astronomy Data using Gesture Interaction.. In Proceedings Astronomical Data Analysis Software and Systems XXIV (ADASS XXIV), pages 145-145.

    2. Versfeld, Erin, James Foster and Michelle Kuttel (2015) Comparison of effectiveness of two mobile application designs for encouraging children to read.. In Proceedings 2015 Annual Research Conference of the South African Institute of Computer Scientists and Information Technologists (SAICSIT 2015)(38), Stellenbosch, South Africa.

    3. Wang, Sunrise, James Gain and Geoff Nitschke (2015) Controlling Crowd Simulations using Neuro-Evolution. In Proceedings Proceedings of the 2015 Annual Conference on Genetic and Evolutionary Computation, Madrid, Spain.

    Journal (Paginated)

    1. Kuttel, Michelle M., Graham E. Jackson, Mpho Mafata and Neil Ravenscroft (2015) Capsular polysaccharide conformations in pneumococcal serotypes 19F and 19A. Carbohydrate Research 406:27-33.

    Electronic Thesis or Dissertation

    1. Badenhorst, Scott (2015) Acceleration of the noise suppression component of the DUCHAMP source-finder.. MSc, Department of Computer Science, University of Cape Town.

    2. Chang, Genevieve (2015) Designing an effective user interface for the Android tablet environment. MSc, Department of Computer Science, University of Cape Town.

    3. Schollar, Christopher (2015) RFI Monitoring for the MeerKAT Radio Telescope. MSc, Department of Computer Science, University of Cape Town.

    2014

    Journal (Paginated)

    1. Kuttel, Michelle, Marc Gordon and Neil Ravenscroft (2014) Comparative simulation of pneumococcal serogroup 19 polysaccharide repeating units with two carbohydrate force fields. Carbohydrate Research 390:20-27.

    2. Perkins, Simon, Jacques Questiaux, Stephen Finniss, Robin Tyler, Sarah Byth and Michelle Kuttel (2014) Scalable desktop visualisation of very large radio astronomy data cubes. New Astronomy 30:1-7.

    Electronic Thesis or Dissertation

    1. Gordon, Marc (2014) Force Field Comparison through Computational Analysis of Capsular Polysaccharides of Streptococcus Pneumoniae Serotypes 19A and F. MSc, Department of Computer Science, University of Cape Town.

    2. Potgieter, Andrew (2014) A Parallel Multidimensional Weighted Histogram Analysis Method. MSc, Department of Computer Science, University of Cape Town.

    3. Wood, Daniel (2014) Fast Galactic Structure Finding using Graphics Processing Units. MSc, Department of Computer Science, University of Cape Town.

    2013

    Conference Paper

    1. Badenhorst, Scott J., Sarah Blyth and Michelle M. Kuttel (2013) Acceleration of Automated HI Source Extraction. In Freidel , Doug , Eds. Proceedings Astronomical Data Analysis Software and Systems XXII, ASP Conference Series 475, pages 53-59, Champaign, IL, USA.

    2. Laidler, Christopher and Michelle M. Kuttel (2013) Detection of binary pulsars with GPU-accelerated sinusoidal Hough transformations.. In Proceedings Astronomical Data Analysis Software and Systems XXII, ASP Conference Series 475, pages 83-87, Champaign, IL, USA.

    Conference Proceedings

    1. Baxter, Richard J., Patrick Marais and Michelle Kuttel (2013) GPU-based Acceleration of Radio Interferometry Point Source Visibility Calculations in the MEQtrees Framework. Astronomical Data Analysis Software and Systems XXII 475, Champaign, IL USA.

    Electronic Thesis or Dissertation

    1. Baxter, Richard (2013) GPU-based Acceleration of Radio Interferometry Point Source Visibility Simulations in the MeqTrees Framework. MSc, Department of Computer Science, University of Cape Town.

    2. Clough, Duncan (2013) Lattice Boltzmann Liquid Simulations on Graphics Hardware. MSc, Department of Computer Science, University of Cape Town.

    3. Mathai, Neann (2013) Molecular modelling of the Streptococcus Pneumoniae serogroup 6 capsular polysaccharide antigens.. MSc, Department of Computer Science, University of Cape Town.

    2012

    Journal (Paginated)

    1. Kuttel, Michelle, Neil Ravenscroft, Michaela Foschiatti, Paola Cescutti and Roberto Rizzo (2012) Conformational properties of two exopolysaccharides produced by Inquilinus limosus, a cystic fibrosis lung pathogen. Carbohydrate Research 350:40-48.

    2011

    Conference Paper

    1. Kuttel, Michelle, Yue Mao, Magnus Lundberg and Goran Widmalm (2011) CarbBuilder: an adjustable tool for building 3D molecular structures of carbohydrates for molecular simulation.. In Proceedings 7th IEEE International Conference on e-Science, Stockholm, Sweden.

    Journal (Paginated)

    1. Kuttel, Michelle (2011) The Conformational Free Energy of Carbohydrates. Mini-Reviews in Organic Chemistry 8(3):256-262.

    Departmental Technical Report

    1. Merry, Bruce and Christoph Held (2011) MLS reconstruction from noisy point sets. Technical Report CS11-04-00, Department of Computer Science, University of Cape Town.

    Electronic Thesis or Dissertation

    1. Tunbridge, Ian (2011) Graphics Processing Unit Accelerated Coarse-Grained Protein-Protein Docking. PhD, Department of Computer Science, University of Cape Town.

    2010

    Conference Paper

    1. Clough, Duncan, Stefano Riviera, Michelle Kuttel, Vincent Geddes and Patrick Marais (2010) Panopticon: A Scalable Monitoring System. In Proceedings Proceedings of South African Institute for Computer Scientists and Information Technologists Conference (SAICSIT 2010).

    2. Jansen van Vuuren, J., M. Kuttel and J. Gain (2010) Visualization of Solution Sets from Automated Docking of Molecular Structures. In Proceedings Proceedings of Afrigraph2010: the 7th International Conference on Virtual Reality, Computer Graphics, Visualization and Interaction in Africa, Franschoek, South Africa.

    Journal (Paginated)

    1. Tunbridge, Ian , Robert B. Best, James Gain and Michelle M. Kuttel (2010) Simulation of Coarse-Grained Protein-Protein Interactions with Graphics Processing Units. Journal of Chemical Theory and Computation 6:3588-3600.

    Electronic Thesis or Dissertation

    1. van den Berg, Rudolf (2010) Force-extension of the Amylose Polysaccharide. MSc, Department of Computer Science, University of Cape Town.

    2009

    Journal (Paginated)

    1. Cross, Simon, Michelle Kuttel, John Stone and James Gain (2009) Visualisation of cyclic and multi-branched molecules with VMD. Journal of Molecular Graphics and Modelling 28(2):131-139.

    2. Zawaira, Alexander , Marco Gallotta, Natasha Beeton-Kempen, Lauren Coulson, Patrick Marais, Michelle Kuttel and Johnathan Blackburn (2009) Exhaustive computational search of ionic-charge clusters that mediate interactions between mammalian cytochrome P450 (CYP) and P450-oxidoreductase (POR) proteins. Computational Biology and Chemistry.

    Preprint

    1. Cross, Simon, Michelle M. Kuttel, John E. Stone and James E. Gain (2009) Visualisation of Cyclic and Multi-Branched Molecules with VMD.

    Electronic Thesis or Dissertation

    1. McMahon, Peter (2009) Accelerating Genomic Sequence Alignment using High Performance Reconfigurable Computers. MSc, Department of Computer Science, University of Cape Town.

    2008

    Journal (Paginated)

    1. Kuttel, Michelle M. (2008) Conformational free energy maps for globobiose
      (a-D-Galp-(1-4)-b-D-Galp) in implicit and explict aqueous solution. Carbohydrate Research 343(6):1091-1098.

    Electronic Thesis or Dissertation

    1. McMahon, Peter (2008) Accelerating Genomic Sequence Alignment using High Performance Reconfigurable Computers. MSc, Department of Computer Science, University of Cape Town.

    2007

    Conference Paper

    1. Nakashole, Ndapandula, Hussein Suleman and Calvin Pedzai (2007) Dynamic Role Allocation for Small Search Engine Clusters. In Barnard, Lynette and Reinhard A Botha, Eds. Proceedings Annual Research Conference of the South African Institute of Computer Scientists and Information Technologists (SAICSIT 2007), Port Alfred, South Africa.

    2. Suleman, Hussein (2007) Digital Libraries Without Databases: The Bleek and Lloyd Collection. In Kovács, László, Norbert Fuhr and Carlo Meghini, Eds. Proceedings Research and Advanced Technology for Digital Libraries, 11th European Conference (ECDL 2007), pages 392-403, Budapest, Hungary.

    2006

    Conference Paper

    1. Omar, Muammar Zamir and Hussein Suleman (2006) Component-based Digital Library Scalability using Cluster Computing. In Proceedings 8th Annual Conference on WWW Applications, Free State.

    2. Suleman, Hussein (2006) Parallelising Harvesting. In Proceedings 9th International Conference on the Asian Digital Library, Kyoto, Japan.

    Journal (Paginated)

    1. Kuttel, Michelle M., James Gain, Anton Burger and Ian Eborn (2006) Techniques for visualization of carbohydrate molecules. Journal of Molecular Graphics and Modelling 25:380-388.

    This list was generated on Sun Dec 17 09:15:52 SAST 2017.